PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG173000.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 192aa    MW: 21176.6 Da    PI: 8.1062
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG173000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.93.2e-12121166655
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +++Er RR ri +++ +L+ l+P+     +k  s a++L +Av++I+ Lq
  Pavir.7KG173000.1.p 121 SIAERERRTRISEKLRKLQALVPNM----DKQTSTADMLDLAVDHIRGLQ 166
                          689*********************7....688*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.475115165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.95E-16118180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.48E-12119170No hitNo description
Gene3DG3DSA:4.10.280.103.8E-14120179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-9121166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.1E-13121171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MNLTRQGALS QISEDGIPDL TNNVHGIGHG EENITANNVA RSFSTGFSIG SWEDSNSIVF  60
SNPASKGVHN NDDIIASLSN YELQFGALKE TTGIDKYLQM QHDQVPFRVR AKRGCATHPR  120
SIAERERRTR ISEKLRKLQA LVPNMDKQTS TADMLDLAVD HIRGLQSELQ GLKEDKEKCT  180
CRGNNRPSSG R*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002448088.11e-117hypothetical protein SORBIDRAFT_06g020810
RefseqXP_004978091.11e-116PREDICTED: transcription factor bHLH128-like, partial
SwissprotQ8H1022e-43BH128_ARATH; Transcription factor bHLH128
TrEMBLC5YAY61e-117C5YAY6_SORBI; Putative uncharacterized protein Sb06g020810
TrEMBLK3Y8H11e-116K3Y8H1_SETIT; Uncharacterized protein
STRINGSi010513m1e-115(Setaria italica)
STRINGSb06g020810.11e-117(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141882026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.11e-44bHLH family protein